That is a good idea to support a command line interface. Please enter a feature request for this in our Issue Tracker,
Yes, the eventual goal is for the Desktop version to support similar functionality to the web and mobile versions.
If you require a specific feature we can better prioritize this if you upgrade to Platinum, Diamond, or Bot Libre for Business.
We can also develop you any feature through our Bot Libre development services, contact [email protected]
If you are a developer, you can also contribute to our open source project on GitHub,